Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs1499965 chr3:124569949 G/A 0.000132 286 26.07 26.38 16.47 KM Plot
KIRP rs150106629 chr10:43511999 A/AAAG 2.84E-6 285 25.63 26.52 16.12 KM Plot
KIRP rs150136661 chr5:156441232 A/G 1.49E-7 284 12.78 23.68 26.28 KM Plot
KIRP rs150324806 chr3:42948675 TGA/T 1.89E-5 288 26.37 22.57 21.17 KM Plot
KIRP rs1503647 chr1:58997285 C/T 2.29E-5 289 25.6 27.43 13.17 KM Plot
KIRP rs1503648 chr1:58997300 C/T 2.29E-5 289 25.6 27.43 13.17 KM Plot
KIRP rs150438686 chr13:46981832 C/T 4.91E-7 289 24.8 37.87 23.23 KM Plot
KIRP rs150455178 chr21:44231151 TA/TAA 0.000165 287 25.53 40.7 13.07 KM Plot
KIRP rs150559879 chr21:44267929 CCTGT/C 0.000167 287 25.57 43.53 13.07 KM Plot
KIRP rs150805941 chr3:42953210 GAAAGCAGA/G 1.89E-5 288 26.37 22.57 21.17 KM Plot
KIRP rs150834471 chr1:58993439 T/TA 2.29E-5 289 25.6 27.43 13.17 KM Plot
KIRP rs150930072 chr1:181723454 T/A 0.000115 282 20.27 29.82 23.97 KM Plot
KIRP rs150969131 chr13:47007142 A/T 6.27E-7 287 24.73 34.38 23.23 KM Plot
KIRP rs151065978 chr15:26167943 C/G 4.22E-5 286 18.82 20.8 26.4 KM Plot
KIRP rs151143065 chr11:47043971 A/AGTACAGT 7.93E-12 288 25.57 28.03 10.82 KM Plot